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A classification method based on a cloud of spheres
2023, EURO JOURNAL ON COMPUTATIONAL OPTIMIZATION, Dias,T;Amaral,P
A decade of urban fires: Portuguese events between 2013 and 2022
2023, SCIENTIFIC DATA, Bispo,R;Marques,FJ;Penha,A;Espadinha Cruz,P;Grilo,A
A risk model for Forest fires based on asymptotic results for multivariate collective models. Single models and structured families of models
2023, COMMUNICATIONS IN STATISTICS-THEORY AND METHODS, Cantarinha,A;Moreira,E;Oliveira,M;Marques,S;Mexia,JT
A toolbox of machine learning software to support microbiome analysis
2023, FRONTIERS IN MICROBIOLOGY, Marcos Zambrano,LJ;Lopez Molina,VM;Bakir Gungor,B;Frohme,M;Karaduzovic Hadziabdic,K;Klammsteiner,T;Ibrahimi,E;Lahti,L;Loncar Turukalo,T;Dhamo,X;Simeon,A;Nechyporenko,A;Pio,G;Przymus,P;Sampri,A;Trajkovik,V;Lacruz Pleguezuelos,B;Aasmets,O;Araujo,R;Anagnostopoulos,I;Aydemir,O;Berland,M;Calle,ML;Ceci,M;Duman,H;Guendogdu,A;Havulinna,AS;Kaka Bra,KHNK;Kalluci,E;Karav,S;Lode,D;Lopes,MB;May,P;Nap,B;Nedyalkova,M;Paciencia,I;Pasic,L;Pujolassos,M;Shigdel,R;Susin,A;Thiele,I;Truica,CO;Wilmes,P;Yilmaz,E;Yousef,M;Claesson,MJ;Truu,J;Carrillo...
Advancing microbiome research with machine learning: key findings from the ML4Microbiome COST action
2023, Frontiers in Microbiology, D'Elia,D;Truu,J;Lahti,L;Berland,M;Papoutsoglou,G;Ceci,M;Zomer,A;Lopes,B;Ibrahimi,E;Gruca,A;Nechyporenko,A;Frohme,M;Klammsteiner,T;Pau,ECS;Marcos Zambrano,LJ;Hron,K;Pio,G;Simeon,A;Suharoschi,R;Moreno Indias,I;Temko,A;Nedyalkova,M;Apostol,E;Truica,C;Shigdel,R;Telalovic,JH;Bongcam Rudloff,E;Przymus,P;Jordamovic,NB;Falquet,L;Tarazona,S;Sampri,A;Isola,G;Pérez Serrano,D;Trajkovik,V;Klucar,L;Loncar...
Disclosing transcriptomics network-based signatures of glioma heterogeneity using sparse methods
2023, BIODATA MINING, Martins,S;Coletti,R;Lopes,MB
Identification of biomarkers predictive of metastasis development in early-stage colorectal cancer using network-based regularization
2023, BMC BIOINFORMATICS, Peixoto,C;Lopes,MB;Martins,M;Casimiro,S;Sobral,D;Grosso,AR;Abreu,C;Macedo,D;Costa,AL;Pais,H;Alvim,C;Mansinho,A;Filipe,P;Costa,PMD;Fernandes,A;Borralho,P;Ferreira,C;Malaquias,J;Quintela,A;Kaplan,S;Golkaram,M;Salmans,M;Khan,N;Vijayaraghavan,R;Zhang,SL;Pawlowski,T;Godsey,J;So,AL;Liu,L;Costa,L;Vinga,S
Machine learning approaches in microbiome research: challenges and best practices
2023, FRONTIERS IN MICROBIOLOGY, Papoutsoglou,G;Tarazona,S;Lopes,MB;Klammsteiner,T;Ibrahimi,E;Eckenberger,J;Novielli,P;Tonda,A;Simeon,A;Shigdel,R;Bereux,S;Vitali,G;Tangaro,S;Lahti,L;Temko,A;Claesson,MJ;Berland,M
Multi-omics Data Integration and Network Inference for Biomarker Discovery in Glioma
2023, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Coletti,R;Lopes,MB
Overview of data preprocessing for machine learning applications in human microbiome research
2023, FRONTIERS IN MICROBIOLOGY, Ibrahimi,E;Lopes,MB;Dhamo,X;Simeon,A;Shigdel,R;Hron,K;Stres,B;D'Elia,D;Berland,M;Marcos Zambrano,LJ
Spatial modelling and mapping of urban fire occurrence in Portugal
2023, FIRE SAFETY JOURNAL, Bispo,R;Vieira,FG;Bachir,N;Espadinha Cruz,P;Lopes,JP;Penha,A;Marques,FJ;Grilo,A
Stability of principal components under normal and non-normal parent populations and different covariance structures scenarios
2023, JOURNAL OF STATISTICAL COMPUTATION AND SIMULATION, Bispo,R;Marques,F
Testing the independence of variables for specific covariance structures: A simulation study
2023, MATHEMATICAL METHODS IN THE APPLIED SCIENCES, Marques,FJ;Diogo,J;Norouzirad,M;Bispo,R
The max-out min-in problem: A tool for data analysis
2023, COMPUTERS & OPERATIONS RESEARCH, Cerdeira,JO;Martins,MJ;Raydan,M
Classification and biomarker selection in lower-grade glioma using robust sparse logistic regression applied to RNA-seq data
2022, Revista Brasileira de Biometria, Carrilho,JF;Lopes,MB
Electricity Spot Price Forecast by Modelling Supply and Demand Curve
2022, MATHEMATICS, Pinhao,M;Fonseca,M;Covas,R
Forecasting biotoxin contamination in mussels across production areas of the Portuguese coast with Artificial Neural Networks
2022, KNOWLEDGE-BASED SYSTEMS, Cruz,RC;Costa,PR;Krippahl,L;Lopes,MB
ROSIE: RObust Sparse ensemble for outlIEr detection and gene selection in cancer omics data
2022, STATISTICAL METHODS IN MEDICAL RESEARCH, Jensch,A;Lopes,MB;Vinga,S;Radde,N
Time-Lagged Correlation Analysis of Shellfish Toxicity Reveals Predictive Links to Adjacent Areas, Species, and Environmental Conditions
2022, TOXINS, Patricio,A;Lopes,MB;Costa,PR;Costa,RS;Henriques,R;Vinga,S
A centrality notion for graphs based on Tukey depth
2021, APPLIED MATHEMATICS AND COMPUTATION, Cerdeira,JO;Silva,PC
A Review of Recent Machine Learning Advances for Forecasting Harmful Algal Blooms and Shellfish Contamination
2021, JOURNAL OF MARINE SCIENCE AND ENGINEERING, Cruz,RC;Costa,PR;Vinga,S;Krippahl,L;Lopes,MB
Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment
2021, FRONTIERS IN MICROBIOLOGY, Marcos Zambrano,LJ;Karaduzovic Hadziabdic,K;Turukalo,TL;Przymus,P;Trajkovik,V;Aasmets,O;Berland,M;Gruca,A;Hasic,J;Hron,K;Klammsteiner,T;Kolev,M;Lahti,L;Lopes,MB;Moreno,V;Naskinova,I;Org,E;Paciencia,I;Papoutsoglou,G;Shigdel,R;Stres,B;Vilne,B;Yousef,M;Zdravevski,E;Tsamardinos,I;Pau,ECD;Claesson,MJ;Moreno Indias,I;Truu,J
Heteroscedastic additive models - Estimating the fixed effects and covariance matrix parameters
2021, HACETTEPE JOURNAL OF MATHEMATICS AND STATISTICS, Silva,A;Fonseca,M
Learning Biomedical Networks: Toward Data-Informed Clinical Decision and Therapy
2021, Computational Biology - Advances in Artificial Intelligence, Computation, and Data Science, Lopes,MB;Vinga,S
Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions
2021, FRONTIERS IN MICROBIOLOGY, Moreno Indias,I;Lahti,L;Nedyalkova,M;Elbere,I;Roshchupkin,G;Adilovic,M;Aydemir,O;Bakir Gungor,B;Pau,ECD;D'Elia,D;Desai,MS;Falquet,L;Gundogdu,A;Hron,K;Klammsteiner,T;Lopes,MB;Marcos Zambrano,LJ;Marques,C;Mason,M;May,P;Pasic,L;Pio,G;Pongor,S;Promponas,VJ;Przymus,P;Saez Rodriguez,J;Sampri,A;Shigdel,R;Stres,B;Suharoschi,R;Truu,J;Truica,CO;Vilne,B;Vlachakis,D;Yilmaz,E;Zeller,G;Zomer,AL;Gomez...
The Role of Network Science in Glioblastoma
2021, CANCERS, Lopes,MB;Martins,EP;Vinga,S;Costa,BM
Assessing the Location of Search and Rescue Stations on the Portuguese Coast
2020, DEVELOPMENTS AND ADVANCES IN DEFENSE AND SECURITY, Correia,A;Moura,R;Fonseca,M
Comparing sleep quality in institutionalized and non-institutionalized elderly individuals
2020, AGING & MENTAL HEALTH, da Silva,RM;Afonso,P;Fonseca,M;Teodoro,T
Identification of Common Gene Signatures in Microarray and RNA-Sequencing Data Using Network-Based Regularization
2020, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Diegues,I;Vinga,S;Lopes,MB
Network-Based Variable Selection for Survival Outcomes in Oncological Data
2020, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Carrasquinha,E;Veríssimo,A;Lopes,MB;Vinga,S
Patterns of Sexual Risk Behavior, HIV Infection, and Use of Health Services Among Sub-Saharan African Migrants in Portugal
2020, JOURNAL OF SEX RESEARCH, Dias,S;Gama,A;Abrantes,P;Gomes,I;Fonseca,M;Reigado,V;Simoes,D;Carreiras,E;Mora,C;Ferreira,AP;Akpogheneta,O;Martins,MO
Robust estimation of heritability and predictive accuracy in plant breeding: evaluation using simulation and empirical data
2020, BMC GENOMICS, Lourenco,VM;Ogutu,JO;Piepho,HP
TCox: Correlation-Based Regularization Applied to Colorectal Cancer Survival Data
2020, BIOMEDICINES, Peixoto,C;Lopes,MB;Martins,M;Costa,L;Vinga,S
Chisquared and related inducing pivot variables: an application to orthogonal mixed models
2019, COMMUNICATIONS IN STATISTICS-THEORY AND METHODS, Ferreira,D;Ferreira,SS;Nunes,C;Fonseca,M;Mexia,JT